[package - head-i386-default][science/gnudatalanguage] Failed for gnudatalanguage-0.9.5_1 in build
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Fri Jan 2 05:54:32 UTC 2015
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: thierry at FreeBSD.org
Last committer: bapt at FreeBSD.org
Ident: $FreeBSD: head/science/gnudatalanguage/Makefile 375598 2014-12-25 20:54:41Z bapt $
Log URL: http://beefy1.isc.freebsd.org/data/head-i386-default/2015-01-01_16h04m54s/logs/gnudatalanguage-0.9.5_1.log
Build URL: http://beefy1.isc.freebsd.org/build.html?mastername=head-i386-default&build=2015-01-01_16h04m54s
Log:
====>> Building science/gnudatalanguage
build started at Fri Jan 2 05:34:30 UTC 2015
port directory: /usr/ports/science/gnudatalanguage
building for: FreeBSD head-i386-default-job-04 11.0-CURRENT FreeBSD 11.0-CURRENT r276439 i386
maintained by: thierry at FreeBSD.org
Makefile ident: $FreeBSD: head/science/gnudatalanguage/Makefile 375598 2014-12-25 20:54:41Z bapt $
Poudriere version: 3.1-pre
Host OSVERSION: 1100050
Jail OSVERSION: 1100051
!!! Jail is newer than host. (Jail: 1100051, Host: 1100050) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
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POUDRIERE_BUILD_TYPE=bulk
PKGNAME=gnudatalanguage-0.9.5_1
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PWD=/usr/local/poudriere/data/.m/head-i386-default/ref/.p/pool
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---Begin OPTIONS List---
===> The following configuration options are available for gnudatalanguage-0.9.5_1:
EIGEN=on: Eigen3 support (boost performance)
EXAMPLES=on: Build and/or install examples
FFTW=on: Discrete Fourier Transform support
GRAPHICSMAGICK=on
GRIB=on: Support GRIB messages
HDF5=on: HDF-5 data format support
LIBPROJ4=on: Support cartographic processes
MPICH2=off: Parallel processing support via MPICH2
NETCDF=on: NetCDF data format support
PYTHON=on: Python bindings or support
UDUNITS=on: Unidata units library (udunits) support
===> Use 'make config' to modify these settings
---End OPTIONS List---
--CONFIGURE_ARGS--
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/science/gnudatalanguage/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/gnudatalanguage/work HOME=/wrkdirs/usr/ports/science/gnudatalanguage/work TMPDIR="/tmp" PKG_CONFIG=pkgconf PYTHON="/usr/local/bin/python2.7" XDG_DATA_HOME=/wrkdirs/usr/ports/science/gnudatalanguage/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/gnudatalanguage/work HOME=/wrkdirs/usr/ports/science/gnudatalanguage/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh WX_CONFIG=/usr/local/bin/wxgtk2u-2.8-config
--End CONFIGURE_ENV--
--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/science/gnudatalanguage/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/gnudatalanguage/work HOME=/wrkdirs/usr/ports/science/gnudatalanguage/work TMPDIR="/tmp" XDG_DATA_HOME=/wrkdirs/usr/ports/science/gnudatalanguage/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/gnudatalanguage/work HOME=/wrkdirs/usr/ports/science/gnudatalanguage/work TMPDIR="/tmp" NO_PIE=yes SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" WX_CONFIG=/usr/local/bin/wxgtk2u-2.8-config PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="gcc48" CFLAGS="-O2 -pipe -fstack-protector -Wl,-rpath=/usr/local/lib/gcc48 -fno-s
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--End MAKE_ENV--
--PLIST_SUB--
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PYTHON_INCLUDEDIR=include/python2.7
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PREFIX=%D
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DATADIR="share/gnudatalanguage"
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--SUB_LIST--
PREFIX=/usr/local
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DATADIR=/usr/local/share/gnudatalanguage
DOCSDIR=/usr/local/share/doc/gnudatalanguage
EXAMPLESDIR=/usr/local/share/examples/gnudatalanguage
WWWDIR=/usr/local/www/gnudatalanguage
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=======================<phase: check-sanity >============================
===> License GPLv2 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> gnudatalanguage-0.9.5_1 depends on file: /usr/local/sbin/pkg - not found
===> Verifying install for /usr/local/sbin/pkg in /usr/ports/ports-mgmt/pkg
===> Installing existing package /packages/All/pkg-1.4.3.txz
[head-i386-default-job-04] Installing pkg-1.4.3...
[head-i386-default-job-04] Extracting pkg-1.4.3... done
Message for pkg-1.4.3:
If you are upgrading from the old package format, first run:
# pkg2ng
===> Returning to build of gnudatalanguage-0.9.5_1
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by gnudatalanguage-0.9.5_1 for building
===========================================================================
=======================<phase: checksum >============================
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by gnudatalanguage-0.9.5_1 for building
=> SHA256 Checksum OK for gdl-0.9.5.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by gnudatalanguage-0.9.5_1 for building
===> Extracting for gnudatalanguage-0.9.5_1
=> SHA256 Checksum OK for gdl-0.9.5.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for gnudatalanguage-0.9.5_1
===> Converting DOS text files to UNIX text files
===> Applying FreeBSD patches for gnudatalanguage-0.9.5_1
===========================================================================
=======================<phase: build-depends >============================
===> gnudatalanguage-0.9.5_1 depends on file: /usr/local/libdata/pkgconfig/eigen3.pc - not found
===> Verifying install for /usr/local/libdata/pkgconfig/eigen3.pc in /usr/ports/math/eigen3
===> Installing existing package /packages/All/eigen-3.2.2.txz
[head-i386-default-job-04] Installing eigen-3.2.2...
[head-i386-default-job-04] Extracting eigen-3.2.2... done
===> Returning to build of gnudatalanguage-0.9.5_1
===> gnudatalanguage-0.9.5_1 depends on file: /usr/local/lib/python2.7/site-packages/numpy/core/numeric.py - not found
===> Verifying install for /usr/local/lib/python2.7/site-packages/numpy/core/numeric.py in /usr/ports/math/py-numpy
===> Installing existing package /packages/All/py27-numpy-1.9.1_1,1.txz
[head-i386-default-job-04] Installing py27-numpy-1.9.1_1,1...
[head-i386-default-job-04] `-- Installing blas-3.4.2_3...
[head-i386-default-job-04] | `-- Installing gcc-4.8.3_2...
[head-i386-default-job-04] | | `-- Installing binutils-2.25...
[head-i386-default-job-04] | | `-- Installing gettext-runtime-0.19.3...
[head-i386-default-job-04] | | | `-- Installing indexinfo-0.2.2...
[head-i386-default-job-04] | | | `-- Extracting indexinfo-0.2.2... done
[head-i386-default-job-04] | | `-- Extracting gettext-runtime-0.19.3... done
[head-i386-default-job-04] | | `-- Extracting binutils-2.25... done
[head-i386-default-job-04] | | `-- Installing gcc-ecj-4.5...
[head-i386-default-job-04] | | `-- Extracting gcc-ecj-4.5... done
[head-i386-default-job-04] | | `-- Installing gmp-5.1.3_2...
[head-i386-default-job-04] | | `-- Extracting gmp-5.1.3_2... done
[head-i386-default-job-04] | | `-- Installing mpc-1.0.2_1...
[head-i386-default-job-04] | | `-- Installing mpfr-3.1.2_2...
[head-i386-default-job-04] | | `-- Extracting mpfr-3.1.2_2... done
[head-i386-default-job-04] | | `-- Extracting mpc-1.0.2_1... done
[head-i386-default-job-04] | `-- Extracting gcc-4.8.3_2... done
[head-i386-default-job-04] `-- Extracting blas-3.4.2_3... done
[head-i386-default-job-04] `-- Installing lapack-3.4.2_3...
[head-i386-default-job-04] `-- Extracting lapack-3.4.2_3... done
<snip>
/usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gnudatalanguage/work/.build/CMakeFiles
[ 66%] Building CXX object src/CMakeFiles/gdl.dir/magick_cl.cpp.o
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[ 68%] Building CXX object src/CMakeFiles/gdl.dir/math_fun_ac.cpp.o
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-fopenmp -o CMakeFiles/gdl.dir/math_fun_ac.cpp.o -c /wrkdirs/usr/ports/science/gnudatalanguage/work/gdl-0.9.5/src/math_fun_ac.cpp
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-fopenmp -o CMakeFiles/gdl.dir/math_fun_gm.cpp.o -c /wrkdirs/usr/ports/science/gnudatalanguage/work/gdl-0.9.5/src/math_fun_gm.cpp
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[ 69%] Building CXX object src/CMakeFiles/gdl.dir/math_fun_jmg.cpp.o
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-fopenmp -o CMakeFiles/gdl.dir/math_fun_ng.cpp.o -c /wrkdirs/usr/ports/science/gnudatalanguage/work/gdl-0.9.5/src/math_fun_ng.cpp
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cd /wrkdirs/usr/ports/science/gnudatalanguage/work/.build/src && /usr/local/bin/g++48 -DHAVE_CONFIG_H -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_THREAD_SAFE -D__WXGTK__ -O2 -pipe -fstack-protector -Wl,-rpath=/usr/local/lib/gcc48 -fno-strict-aliasing -nostdinc++ -isystem /usr/local/include/c++/v1 -Wl,-rpath=/usr/local/lib/gcc48 -O2 -pipe -fstack-protector -Wl,-rpath=/usr/local/lib/gcc48 -fno-strict-aliasing -nostdinc++ -isystem /usr/local/include/c++/v1 -Wl,-rpath=/usr/local/lib/gcc48 -I/wrkdirs/usr/ports/science/gnudatalanguage/work/gdl-0.9.5/src -I/usr/local/include -I/usr/local/include/GraphicsMagick -I/usr/local/lib/wx/include/gtk2-unicode-release-2.8 -I/usr/local/include/wx-2.8 -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/eigen3 -I/wrkdirs/usr/ports/science/gnudatalanguage/work/gdl-0.9.5 -I/wrkdirs/usr/ports/science/gnudatalanguage/work/gdl-0.9.5/src/antlr -I/wrkdirs/usr/ports/science/gnudatalanguage/work/.build
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cd /wrkdirs/usr/ports/science/gnudatalanguage/work/.build/src && /usr/local/bin/g++48 -DHAVE_CONFIG_H -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_THREAD_SAFE -D__WXGTK__ -O2 -pipe -fstack-protector -Wl,-rpath=/usr/local/lib/gcc48 -fno-strict-aliasing -nostdinc++ -isystem /usr/local/include/c++/v1 -Wl,-rpath=/usr/local/lib/gcc48 -O2 -pipe -fstack-protector -Wl,-rpath=/usr/local/lib/gcc48 -fno-strict-aliasing -nostdinc++ -isystem /usr/local/include/c++/v1 -Wl,-rpath=/usr/local/lib/gcc48 -I/wrkdirs/usr/ports/science/gnudatalanguage/work/gdl-0.9.5/src -I/usr/local/include -I/usr/local/include/GraphicsMagick -I/usr/local/lib/wx/include/gtk2-unicode-release-2.8 -I/usr/local/include/wx-2.8 -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/eigen3 -I/wrkdirs/usr/ports/science/gnudatalanguage/work/gdl-0.9.5 -I/wrkdirs/usr/ports/science/gnudatalanguage/work/gdl-0.9.5/src/antlr -I/wrkdirs/usr/ports/science/gnudatalanguage/work/.build
-fopenmp -o CMakeFiles/gdl.dir/topython.cpp.o -c /wrkdirs/usr/ports/science/gnudatalanguage/work/gdl-0.9.5/src/topython.cpp
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cd /wrkdirs/usr/ports/science/gnudatalanguage/work/.build/src && /usr/local/bin/g++48 -DHAVE_CONFIG_H -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_THREAD_SAFE -D__WXGTK__ -O2 -pipe -fstack-protector -Wl,-rpath=/usr/local/lib/gcc48 -fno-strict-aliasing -nostdinc++ -isystem /usr/local/include/c++/v1 -Wl,-rpath=/usr/local/lib/gcc48 -O2 -pipe -fstack-protector -Wl,-rpath=/usr/local/lib/gcc48 -fno-strict-aliasing -nostdinc++ -isystem /usr/local/include/c++/v1 -Wl,-rpath=/usr/local/lib/gcc48 -I/wrkdirs/usr/ports/science/gnudatalanguage/work/gdl-0.9.5/src -I/usr/local/include -I/usr/local/include/GraphicsMagick -I/usr/local/lib/wx/include/gtk2-unicode-release-2.8 -I/usr/local/include/wx-2.8 -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/eigen3 -I/wrkdirs/usr/ports/science/gnudatalanguage/work/gdl-0.9.5 -I/wrkdirs/usr/ports/science/gnudatalanguage/work/gdl-0.9.5/src/antlr -I/wrkdirs/usr/ports/science/gnudatalanguage/work/.build
-fopenmp -o CMakeFiles/gdl.dir/typetraits.cpp.o -c /wrkdirs/usr/ports/science/gnudatalanguage/work/gdl-0.9.5/src/typetraits.cpp
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cd /wrkdirs/usr/ports/science/gnudatalanguage/work/.build/src && /usr/local/bin/g++48 -DHAVE_CONFIG_H -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_THREAD_SAFE -D__WXGTK__ -O2 -pipe -fstack-protector -Wl,-rpath=/usr/local/lib/gcc48 -fno-strict-aliasing -nostdinc++ -isystem /usr/local/include/c++/v1 -Wl,-rpath=/usr/local/lib/gcc48 -O2 -pipe -fstack-protector -Wl,-rpath=/usr/local/lib/gcc48 -fno-strict-aliasing -nostdinc++ -isystem /usr/local/include/c++/v1 -Wl,-rpath=/usr/local/lib/gcc48 -I/wrkdirs/usr/ports/science/gnudatalanguage/work/gdl-0.9.5/src -I/usr/local/include -I/usr/local/include/GraphicsMagick -I/usr/local/lib/wx/include/gtk2-unicode-release-2.8 -I/usr/local/include/wx-2.8 -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/eigen3 -I/wrkdirs/usr/ports/science/gnudatalanguage/work/gdl-0.9.5 -I/wrkdirs/usr/ports/science/gnudatalanguage/work/gdl-0.9.5/src/antlr -I/wrkdirs/usr/ports/science/gnudatalanguage/work/.build
-fopenmp -o CMakeFiles/gdl.dir/widget.cpp.o -c /wrkdirs/usr/ports/science/gnudatalanguage/work/gdl-0.9.5/src/widget.cpp
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cd /wrkdirs/usr/ports/science/gnudatalanguage/work/.build/src && /usr/local/bin/g++48 -DHAVE_CONFIG_H -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_THREAD_SAFE -D__WXGTK__ -O2 -pipe -fstack-protector -Wl,-rpath=/usr/local/lib/gcc48 -fno-strict-aliasing -nostdinc++ -isystem /usr/local/include/c++/v1 -Wl,-rpath=/usr/local/lib/gcc48 -O2 -pipe -fstack-protector -Wl,-rpath=/usr/local/lib/gcc48 -fno-strict-aliasing -nostdinc++ -isystem /usr/local/include/c++/v1 -Wl,-rpath=/usr/local/lib/gcc48 -I/wrkdirs/usr/ports/science/gnudatalanguage/work/gdl-0.9.5/src -I/usr/local/include -I/usr/local/include/GraphicsMagick -I/usr/local/lib/wx/include/gtk2-unicode-release-2.8 -I/usr/local/include/wx-2.8 -I/usr/local/include/python2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/eigen3 -I/wrkdirs/usr/ports/science/gnudatalanguage/work/gdl-0.9.5 -I/wrkdirs/usr/ports/science/gnudatalanguage/work/gdl-0.9.5/src/antlr -I/wrkdirs/usr/ports/science/gnudatalanguage/work/.build
-fopenmp -o CMakeFiles/gdl.dir/gdl.cpp.o -c /wrkdirs/usr/ports/science/gnudatalanguage/work/gdl-0.9.5/src/gdl.cpp
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lotd.so /usr/local/lib/libplplotcxxd.so /usr!
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b/libGraphicsMagick.so /usr/local/lib/libGraphicsMagick++.so -lwx_baseu-2.8 -lwx_gtk2u_core-2.8 -lwx_gtk2u_adv-2.8 -lnetcdf /usr/local/lib/libhdf5.so -lm /usr/local/lib/libfftw3.so /usr/local/lib/libfftw3f.so -lproj4 /usr/local/lib/libpython2.7.so /usr/local/lib/libudunits2.so -lps /usr/local/lib/libgrib_api.so /usr/local/lib/libSM.so /usr/local/lib/libICE.so /usr/local/lib/libX11.so /usr/local/lib/libXext.so -Wl,-rpath,/usr/local/lib:
CMakeFiles/gdl.dir/magick_cl.cpp.o: In function `lib::magick_open(EnvT*)':
magick_cl.cpp:(.text+0x2ce): undefined reference to `Magick::Image::read(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&)'
CMakeFiles/gdl.dir/magick_cl.cpp.o: In function `lib::magick_readindexes(EnvT*)':
magick_cl.cpp:(.text+0xdcc): undefined reference to `Magick::Image::write(int, int, unsigned int, unsigned int, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, MagickLib::StorageType, void*)'
magick_cl.cpp:(.text+0xfe2): undefined reference to `Magick::Image::write(int, int, unsigned int, unsigned int, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, MagickLib::StorageType, void*)'
CMakeFiles/gdl.dir/magick_cl.cpp.o: In function `lib::magick_read(EnvT*)':
magick_cl.cpp:(.text+0x19bc): undefined reference to `Magick::Image::write(int, int, unsigned int, unsigned int, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, MagickLib::StorageType, void*)'
CMakeFiles/gdl.dir/magick_cl.cpp.o: In function `lib::magick_write(EnvT*)':
magick_cl.cpp:(.text+0x2654): undefined reference to `Magick::Image::read(unsigned int, unsigned int, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, MagickLib::StorageType, void const*)'
CMakeFiles/gdl.dir/magick_cl.cpp.o: In function `lib::magick_writefile(EnvT*)':
magick_cl.cpp:(.text+0x3289): undefined reference to `Magick::Image::magick(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&)'
magick_cl.cpp:(.text+0x32a8): undefined reference to `Magick::Image::write(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&)'
CMakeFiles/gdl.dir/magick_cl.cpp.o: In function `lib::magick_magick(EnvT*)':
magick_cl.cpp:(.text+0x3cdd): undefined reference to `Magick::Image::magick(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&)'
CMakeFiles/gdl.dir/magick_cl.cpp.o: In function `lib::magick_ping(EnvT*)':
magick_cl.cpp:(.text+0x6b08): undefined reference to `Magick::Image::ping(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&)'
CMakeFiles/gdl.dir/magick_cl.cpp.o: In function `lib::magick_create(EnvT*)':
magick_cl.cpp:(.text+0x995c): undefined reference to `Magick::Color::Color(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&)'
collect2: error: ld returned 1 exit status
*** Error code 1
Stop.
make[3]: stopped in /wrkdirs/usr/ports/science/gnudatalanguage/work/.build
*** Error code 1
Stop.
make[2]: stopped in /wrkdirs/usr/ports/science/gnudatalanguage/work/.build
*** Error code 1
Stop.
make[1]: stopped in /wrkdirs/usr/ports/science/gnudatalanguage/work/.build
*** Error code 1
Stop.
make: stopped in /usr/ports/science/gnudatalanguage
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