[package - 91amd64-default][science/libghemical] Failed for libghemical-3.0.0_3 in configure
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Thu Sep 11 04:21:17 UTC 2014
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: ports at FreeBSD.org
Last committer: amdmi3 at FreeBSD.org
Ident: $FreeBSD: head/science/libghemical/Makefile 364199 2014-08-06 16:06:22Z amdmi3 $
Log URL: http://beefy2.isc.freebsd.org/data/91amd64-default/2014-09-10_22h01m02s/logs/libghemical-3.0.0_3.log
Build URL: http://beefy2.isc.freebsd.org/build.html?mastername=91amd64-default&build=2014-09-10_22h01m02s
Log:
====>> Building science/libghemical
build started at Thu Sep 11 04:20:39 UTC 2014
port directory: /usr/ports/science/libghemical
building for: FreeBSD 91amd64-default-job-08 9.1-RELEASE-p17 FreeBSD 9.1-RELEASE-p17 amd64
maintained by: ports at FreeBSD.org
Makefile ident: $FreeBSD: head/science/libghemical/Makefile 364199 2014-08-06 16:06:22Z amdmi3 $
Poudriere version: 3.1-pre
Host OSVERSION: 1100027
Jail OSVERSION: 901000
---Begin Environment---
OSVERSION=901000
UNAME_v=FreeBSD 9.1-RELEASE-p17
UNAME_r=9.1-RELEASE-p17
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/91amd64-default/ref
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=libghemical-3.0.0_3
OLDPWD=/root
PWD=/usr/local/poudriere/data/.m/91amd64-default/ref/.p/pool
MASTERNAME=91amd64-default
USER=root
HOME=/root
POUDRIERE_VERSION=3.1-pre
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
---End Environment---
---Begin OPTIONS List---
---End OPTIONS List---
--CONFIGURE_ARGS--
--enable-mpqc --x-libraries=/usr/local/lib --x-includes=/usr/local/include --prefix=/usr/local ${_LATE_CONFIGURE_ARGS}
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/science/libghemical/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/libghemical/work HOME=/wrkdirs/usr/ports/science/libghemical/work TMPDIR="/tmp" F77="gfortran47" FC="gfortran47" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc47" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc47" MAKE=gmake PKG_CONFIG=pkgconf SHELL=/bin/sh CONFIG_SHELL=/bin/sh ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144
--End CONFIGURE_ENV--
--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/science/libghemical/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/libghemical/work HOME=/wrkdirs/usr/ports/science/libghemical/work TMPDIR="/tmp" F77="gfortran47" FC="gfortran47" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc47" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc47" NO_PIE=yes SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="cc" CFLAGS="-O2 -pipe -fno-strict-aliasing" CPP="cpp" CPPFLAGS="-I/usr/local/include" LDFLAGS=" -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin" LIBS="" CXX="c++" CXXFLA
GS="-O2 -pipe -fno-strict-aliasing" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -o root -g wheel -m 555" BSD_INSTALL_LIB="install -s -o root -g wheel -m 444" BSD_INSTALL_SCRIPT="install -o root -g wheel -m 555" BSD_INSTALL_DATA="install -o root -g wheel -m 0644" BSD_INSTALL_MAN="install -o root -g wheel -m 444"
--End MAKE_ENV--
--PLIST_SUB--
LIBGHEMICAL_VERSION="3.0.0"
OSREL=9.1
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
DOCSDIR="share/doc/libghemical"
EXAMPLESDIR="share/examples/libghemical"
DATADIR="share/libghemical"
WWWDIR="www/libghemical"
ETCDIR="etc/libghemical"
--End PLIST_SUB--
--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/libghemical
DOCSDIR=/usr/local/share/doc/libghemical
EXAMPLESDIR=/usr/local/share/examples/libghemical
WWWDIR=/usr/local/www/libghemical
ETCDIR=/usr/local/etc/libghemical
--End SUB_LIST--
---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
#### /usr/local/etc/poudriere.d/make.conf ####
WITH_PKGNG=yes
#WITH_PKGNG=devel
# clean-restricted ran via poudriere.conf NO_RESTRICTED
#NO_RESTRICTED=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
=======================<phase: check-sanity >============================
===========================================================================
=======================<phase: pkg-depends >============================
===> libghemical-3.0.0_3 depends on file: /usr/local/sbin/pkg - not found
===> Verifying install for /usr/local/sbin/pkg in /usr/ports/ports-mgmt/pkg
===> Installing existing package /packages/All/pkg-1.3.7.txz
[91amd64-default-job-08] Installing pkg-1.3.7... done
Message for pkg-1.3.7:
If you are upgrading from the old package format, first run:
# pkg2ng
===> Returning to build of libghemical-3.0.0_3
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> Fetching all distfiles required by libghemical-3.0.0_3 for building
===========================================================================
=======================<phase: checksum >============================
===> Fetching all distfiles required by libghemical-3.0.0_3 for building
=> SHA256 Checksum OK for libghemical-3.0.0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> Fetching all distfiles required by libghemical-3.0.0_3 for building
===> Extracting for libghemical-3.0.0_3
=> SHA256 Checksum OK for libghemical-3.0.0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for libghemical-3.0.0_3
===========================================================================
=======================<phase: build-depends >============================
===> libghemical-3.0.0_3 depends on executable: obabel - not found
===> Verifying install for obabel in /usr/ports/science/openbabel
===> Installing existing package /packages/All/openbabel-2.3.2_1.txz
[91amd64-default-job-08] Installing libiconv-1.14_4... done
[91amd64-default-job-08] Installing libxml2-2.9.1_1... done
[91amd64-default-job-08] Installing indexinfo-0.2... done
[91amd64-default-job-08] Installing gettext-0.18.3.1_1... done
[91amd64-default-job-08] Installing python27-2.7.8_4... done
[91amd64-default-job-08] Installing openbabel-2.3.2_1... done
Message for python27-2.7.8_4:
=====================================================================
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:
bsddb databases/py-bsddb
gdbm databases/py-gdbm
sqlite3 databases/py-sqlite3
tkinter x11-toolkits/py-tkinter
=====================================================================
===> Returning to build of libghemical-3.0.0_3
===> libghemical-3.0.0_3 depends on executable: intltool-update - not found
===> Verifying install for intltool-update in /usr/ports/textproc/intltool
===> Installing existing package /packages/All/intltool-0.50.2.txz
[91amd64-default-job-08] Installing expat-2.1.0_1... done
[91amd64-default-job-08] Installing perl5-5.16.3_11... done
[91amd64-default-job-08] Installing p5-XML-Parser-2.41_1... done
[91amd64-default-job-08] Installing intltool-0.50.2... done
===> Returning to build of libghemical-3.0.0_3
===> libghemical-3.0.0_3 depends on executable: ld - found
===> libghemical-3.0.0_3 depends on executable: gfortran47 - not found
===> Verifying install for gfortran47 in /usr/ports/lang/gcc
===> Installing existing package /packages/All/gcc-4.7.4.txz
[91amd64-default-job-08] Installing binutils-2.24_1... done
[91amd64-default-job-08] Installing gcc-ecj-4.5... done
[91amd64-default-job-08] Installing gmp-5.1.3_2... done
[91amd64-default-job-08] Installing mpfr-3.1.2_2... done
[91amd64-default-job-08] Installing mpc-1.0.2_1... done
[91amd64-default-job-08] Installing gcc-4.7.4... done
Message for gcc-4.7.4:
To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using
-Wl,-rpath=/usr/local/lib/gcc47
For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
===> Returning to build of libghemical-3.0.0_3
===> libghemical-3.0.0_3 depends on executable: gmake - not found
===> Verifying install for gmake in /usr/ports/devel/gmake
===> Installing existing package /packages/All/gmake-3.82_1.txz
[91amd64-default-job-08] Installing gmake-3.82_1... done
===> Returning to build of libghemical-3.0.0_3
===> libghemical-3.0.0_3 depends on executable: pkgconf - not found
===> Verifying install for pkgconf in /usr/ports/devel/pkgconf
===> Installing existing package /packages/All/pkgconf-0.9.6_1.txz
[91amd64-default-job-08] Installing pkgconf-0.9.6_1... done
===> Returning to build of libghemical-3.0.0_3
===> libghemical-3.0.0_3 depends on file: /usr/local/bin/as - found
===> libghemical-3.0.0_3 depends on file: /usr/local/libdata/pkgconfig/glproto.pc - not found
===> Verifying install for /usr/local/libdata/pkgconfig/glproto.pc in /usr/ports/x11/glproto
===> Installing existing package /packages/All/glproto-1.4.17.txz
[91amd64-default-job-08] Installing glproto-1.4.17... done
===> Returning to build of libghemical-3.0.0_3
===> libghemical-3.0.0_3 depends on file: /usr/local/libdata/pkgconfig/dri2proto.pc - not found
===> Verifying install for /usr/local/libdata/pkgconfig/dri2proto.pc in /usr/ports/x11/dri2proto
===> Installing existing package /packages/All/dri2proto-2.8.txz
[91amd64-default-job-08] Installing dri2proto-2.8... done
===> Returning to build of libghemical-3.0.0_3
===========================================================================
=======================<phase: lib-depends >============================
===> libghemical-3.0.0_3 depends on shared library: libmpqc.so - not found
===> Verifying for libmpqc.so in /usr/ports/science/mpqc
===> Installing existing package /packages/All/mpqc-2.3.1_22.txz
[91amd64-default-job-08] Installing blas-3.4.2_2... done
[91amd64-default-job-08] Installing lapack-3.4.2_2... done
[91amd64-default-job-08] Installing libexecinfo-1.1_3... done
[91amd64-default-job-08] Installing libint-1.1.4_1... done
[91amd64-default-job-08] Installing mpqc-2.3.1_22... done
===> Returning to build of libghemical-3.0.0_3
===> libghemical-3.0.0_3 depends on shared library: libf2c.so - not found
===> Verifying for libf2c.so in /usr/ports/lang/f2c
===> Installing existing package /packages/All/f2c-20060810_4.txz
[91amd64-default-job-08] Installing f2c-20060810_4... done
===> Returning to build of libghemical-3.0.0_3
===> libghemical-3.0.0_3 depends on shared library: libintl.so - found (/usr/local/lib/libintl.so.9)
===> libghemical-3.0.0_3 depends on shared library: libGL.so - not found
===> Verifying for libGL.so in /usr/ports/graphics/libGL
===> Installing existing package /packages/All/libGL-7.6.1_4.txz
[91amd64-default-job-08] Installing kbproto-1.0.6... done
[91amd64-default-job-08] Installing xproto-7.0.26... done
[91amd64-default-job-08] Installing libXau-1.0.8_2... done
[91amd64-default-job-08] Installing libXdmcp-1.1.1_2... done
[91amd64-default-job-08] Installing libpthread-stubs-0.3_5... done
[91amd64-default-job-08] Installing libxcb-1.10_2... done
[91amd64-default-job-08] Installing libX11-1.6.2_2,1... done
[91amd64-default-job-08] Installing damageproto-1.2.1... done
[91amd64-default-job-08] Installing fixesproto-5.0... done
[91amd64-default-job-08] Installing libXfixes-5.0.1_2... done
[91amd64-default-job-08] Installing libXdamage-1.1.4_2... done
[91amd64-default-job-08] Installing xextproto-7.3.0... done
[91amd64-default-job-08] Installing libXext-1.3.2_2,1... done
[91amd64-default-job-08] Installing xf86vidmodeproto-2.3.1... done
[91amd64-default-job-08] Installing libXxf86vm-1.1.3_2... done
[91amd64-default-job-08] Installing pciids-20140830... done
[91amd64-default-job-08] Installing libpciaccess-0.13.2_2... done
[91amd64-default-job-08] Installing libdrm-2.4.17_2,1... done
[91amd64-default-job-08] Installing libGL-7.6.1_4... done
===> Returning to build of libghemical-3.0.0_3
===========================================================================
=======================<phase: configure >============================
===> Configuring for libghemical-3.0.0_3
configure: loading site script /usr/ports/Templates/config.site
checking for a BSD-compatible install... /usr/bin/install -c -o root -g wheel
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... (cached) /bin/mkdir -p
checking for gawk... (cached) /usr/bin/awk
checking whether gmake sets $(MAKE)... yes
checking build system type... amd64-portbld-freebsd9.1
checking host system type... amd64-portbld-freebsd9.1
checking for gcc... cc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether cc accepts -g... yes
checking for cc option to accept ISO C89... none needed
checking for style of include used by gmake... GNU
checking dependency style of cc... gcc3
checking whether we are using the GNU C++ compiler... yes
checking whether c++ accepts -g... yes
checking dependency style of c++... gcc3
checking how to run the C preprocessor... cpp
checking how to run the C++ preprocessor... c++ -E
checking for a sed that does not truncate output... (cached) /usr/bin/sed
checking for grep that handles long lines and -e... (cached) /usr/bin/grep
checking for egrep... (cached) /usr/bin/egrep
checking for fgrep... (cached) /usr/bin/fgrep
checking for ld used by cc... /usr/local/bin/ld
checking if the linker (/usr/local/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/local/bin/nm
checking the name lister (/usr/local/bin/nm) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... (cached) 262144
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... no
checking for /usr/local/bin/ld option to reload object files... -r
checking for objdump... /usr/local/bin/objdump
checking how to recognize dependent libraries... pass_all
checking for ar... /usr/local/bin/ar
checking for strip... strip
checking for ranlib... /usr/local/bin/ranlib
checking command to parse /usr/local/bin/nm output from cc object... ok
checking for ANSI C header files... (cached) yes
checking for sys/types.h... (cached) yes
checking for sys/stat.h... (cached) yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for memory.h... (cached) yes
checking for strings.h... (cached) yes
checking for inttypes.h... (cached) yes
checking for stdint.h... (cached) yes
checking for unistd.h... (cached) yes
checking for dlfcn.h... (cached) yes
checking whether we are using the GNU C++ compiler... (cached) yes
checking whether c++ accepts -g... (cached) yes
checking dependency style of c++... (cached) gcc3
checking how to run the C++ preprocessor... c++ -E
checking for objdir... .libs
checking if cc supports -fno-rtti -fno-exceptions... no
checking for cc option to produce PIC... -fPIC -DPIC
checking if cc PIC flag -fPIC -DPIC works... yes
checking if cc static flag -static works... yes
checking if cc supports -c -o file.o... yes
checking if cc supports -c -o file.o... (cached) yes
checking whether the cc linker (/usr/local/bin/ld) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... freebsd9.1 ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for ld used by c++... /usr/local/bin/ld
checking if the linker (/usr/local/bin/ld) is GNU ld... yes
checking whether the c++ linker (/usr/local/bin/ld) supports shared libraries... yes
checking for c++ option to produce PIC... -fPIC -DPIC
checking if c++ PIC flag -fPIC -DPIC works... yes
checking if c++ static flag -static works... yes
checking if c++ supports -c -o file.o... yes
checking if c++ supports -c -o file.o... (cached) yes
checking whether the c++ linker (/usr/local/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... freebsd9.1 ld.so
checking how to hardcode library paths into programs... immediate
checking for ar... /usr/local/bin/ar
checking for sh... /bin/sh
checking whether gmake sets $(MAKE)... (cached) yes
checking pkg-config is at least version 0.9.0... yes
checking whether NLS is requested... yes
checking for intltool >= 0.40.0... 0.50.2 found
checking for intltool-update... /usr/local/bin/intltool-update
checking for intltool-merge... /usr/local/bin/intltool-merge
checking for intltool-extract... /usr/local/bin/intltool-extract
checking for xgettext... /usr/local/bin/xgettext
checking for msgmerge... /usr/local/bin/msgmerge
checking for msgfmt... /usr/local/bin/msgfmt
checking for gmsgfmt... /usr/local/bin/msgfmt
checking for perl... /usr/bin/perl
checking for perl >= 5.8.1... 5.16.3
checking for XML::Parser... ok
checking locale.h usability... yes
checking locale.h presence... yes
checking for locale.h... yes
checking for LC_MESSAGES... yes
checking libintl.h usability... yes
checking libintl.h presence... yes
checking for libintl.h... yes
checking for ngettext in libc... no
checking for bindtextdomain in -lintl... yes
checking for ngettext in -lintl... yes
checking for dgettext in -lintl... yes
checking for bind_textdomain_codeset... yes
checking for msgfmt... (cached) /usr/local/bin/msgfmt
checking for dcgettext... yes
checking if msgfmt accepts -c... yes
checking for gmsgfmt... (cached) /usr/local/bin/msgfmt
checking for xgettext... (cached) /usr/local/bin/xgettext
checking whether build environment is sane... yes
checking for acos in -lm... yes
checking for main in -lblas... yes
checking for main in -llapack... yes
checking for sc-config... /usr/local/bin/sc-config
checking SC - version... no
*** Could not run SC test program, checking why...
*** The test program compiled, but did not run. This usually means
*** that the run-time linker is not finding SC or finding the wrong
*** version of SC. If it is not finding SC, you'll need to set your
*** LD_LIBRARY_PATH environment variable, or edit /etc/ld.so.conf to point
*** to the installed location Also, make sure you have run ldconfig if that
*** is required on your system
***
*** If you have an old version installed, it is best to remove it, although
*** you may also be able to get things to work by modifying LD_LIBRARY_PATH
***
*** If you have a RedHat 5.0 system, you should remove the SC package that
*** came with the system with the command
***
*** rpm --erase --nodeps sc sc-devel
configure: error: Cannot find proper SC version
===> Script "configure" failed unexpectedly.
Please report the problem to ports at FreeBSD.org [maintainer] and attach the
"/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/config.log"
including the output of the failure of your make command. Also, it might be
a good idea to provide an overview of all packages installed on your system
(e.g. a /usr/local/sbin/pkg-static info -g -Ea).
*** [do-configure] Error code 1
Stop in /usr/ports/science/libghemical.
More information about the freebsd-pkg-fallout
mailing list