[REL - 83amd64-default][science/gromacs] Failed for gromacs-4.6.5_1 in build
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Wed Jan 1 13:18:22 UTC 2014
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: ports at FreeBSD.org
Last committer: tijl at FreeBSD.org
Ident: $FreeBSD: head/science/gromacs/Makefile 337747 2013-12-27 16:39:52Z tijl $
Log URL: http://beefy2.isc.freebsd.org/bulk/83amd64-default/2014-01-01_05h09m12s/logs/gromacs-4.6.5_1.log
Build URL: http://beefy2.isc.freebsd.org/bulk/83amd64-default/2014-01-01_05h09m12s
Log:
====>> Building science/gromacs
build started at Wed Jan 1 13:17:11 UTC 2014
port directory: /usr/ports/science/gromacs
building for: FreeBSD 83amd64-default-job-19 8.3-RELEASE FreeBSD 8.3-RELEASE amd64
maintained by: ports at FreeBSD.org
Makefile ident: $FreeBSD: head/science/gromacs/Makefile 337747 2013-12-27 16:39:52Z tijl $
Poudriere version: 3.1-pre
---Begin Environment---
OSVERSION=803000
UNAME_v=FreeBSD 8.3-RELEASE
UNAME_r=8.3-RELEASE
FTP_PASSIVE_MODE=YES
BLOCKSIZE=K
MAIL=/var/mail/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin
STATUS=1
MASTERMNT=/usr/local/poudriere/data/build/83amd64-default/ref
PKG_EXT=txz
tpid=87716
POUDRIERE_BUILD_TYPE=bulk
PKGNG=1
PKGNAME=gromacs-4.6.5_1
PKG_DELETE=/usr/local/sbin/pkg-static delete -y -f
PKG_ADD=/usr/local/sbin/pkg-static add
PWD=/root
MASTERNAME=83amd64-default
USER=root
HOME=/root
POUDRIERE_VERSION=3.1-pre
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
PKG_VERSION=/poudriere/pkg-static version
PKG_BIN=/usr/local/sbin/pkg-static
---End Environment---
---Begin OPTIONS List---
===> The following configuration options are available for gromacs-4.6.5_1:
ATLAS=off: Use ATLAS for BLAS and LAPACK
FLOAT=on: Use single instead of double precision
GSL=on: Extra analysis using math/gsl
SIMD=off: Use CPU-specific optimizations
X11=on: X11 (graphics) support
====> Options available for the radio MPI: you can only select none or one of them
MPICH=off: MPI support using net/mpich2
OMPI=off: MPI support using net/openmpi
===> Use 'make config' to modify these settings
---End OPTIONS List---
--CONFIGURE_ARGS--
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
TMPDIR="/tmp" TMPDIR="/tmp" F77="gfortran46" FC="gfortran46" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc46" PKG_CONFIG=pkgconf SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--
--MAKE_ENV--
TMPDIR="/tmp" TMPDIR="/tmp" F77="gfortran46" FC="gfortran46" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc46" SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="cc" CFLAGS="-O2 -pipe -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc46 -L/usr/local/lib/gcc46" CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -o root -g wheel -m 555" BSD_INSTALL_LIB="install -s -o root -g wheel -m 444" BSD_INSTALL_SCRIPT="install -o root -g wheel -m 555" BSD_INSTALL_DATA="install -o root -g whe
el -m 444" BSD_INSTALL_MAN="install -o root -g wheel -m 444"
--End MAKE_ENV--
--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/gromacs
DOCSDIR=/usr/local/share/doc/gromacs
EXAMPLESDIR=/usr/local/share/examples/gromacs
WWWDIR=/usr/local/www/gromacs
ETCDIR=/usr/local/etc/gromacs
--End SUB_LIST--
---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
#### /usr/local/etc/poudriere.d/make.conf ####
WITH_PKGNG=yes
NO_RESTRICTED=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
===> Cleaning for gromacs-4.6.5_1
=======================<phase: check-config >============================
===========================================================================
=======================<phase: pkg-depends >============================
===> gromacs-4.6.5_1 depends on file: /usr/local/sbin/pkg - not found
===> Verifying install for /usr/local/sbin/pkg in /usr/ports/ports-mgmt/pkg
===> Installing existing package /packages/All/pkg-1.2.4_1.txz
Installing pkg-1.2.4_1... done
If you are upgrading from the old package format, first run:
# pkg2ng
===> Returning to build of gromacs-4.6.5_1
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License LGPL21 accepted by the user
===> Fetching all distfiles required by gromacs-4.6.5_1 for building
===========================================================================
=======================<phase: checksum >============================
===> License LGPL21 accepted by the user
===> Fetching all distfiles required by gromacs-4.6.5_1 for building
=> SHA256 Checksum OK for gromacs-4.6.5.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License LGPL21 accepted by the user
===> Fetching all distfiles required by gromacs-4.6.5_1 for building
===> Extracting for gromacs-4.6.5_1
=> SHA256 Checksum OK for gromacs-4.6.5.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for gromacs-4.6.5_1
===> Applying FreeBSD patches for gromacs-4.6.5_1
===========================================================================
=======================<phase: build-depends >============================
===> gromacs-4.6.5_1 depends on package: fftw3>0 - not found
===> Verifying install for fftw3>0 in /usr/ports/math/fftw3
===> Installing existing package /packages/All/fftw3-3.3.3_1.txz
Installing fftw3-3.3.3_1... done
===> Returning to build of gromacs-4.6.5_1
===> gromacs-4.6.5_1 depends on file: /usr/local/bin/cmake - not found
===> Verifying install for /usr/local/bin/cmake in /usr/ports/devel/cmake
===> Installing existing package /packages/All/cmake-2.8.12.1.txz
Installing cmake-2.8.12.1...Installing cmake-modules-2.8.12.1_1... done
done
===> Returning to build of gromacs-4.6.5_1
===> gromacs-4.6.5_1 depends on executable: gfortran46 - not found
===> Verifying install for gfortran46 in /usr/ports/lang/gcc
===> Installing existing package /packages/All/gcc-4.6.4.txz
Installing gcc-4.6.4...Installing binutils-2.24...Installing gettext-0.18.3.1...Installing libiconv-1.14_1... done
done
done
Installing gcc-ecj-4.5... done
Installing gmp-5.1.3... done
Installing mpc-1.0.1...Installing mpfr-3.1.2... done
done
done
===> Returning to build of gromacs-4.6.5_1
===> gromacs-4.6.5_1 depends on executable: pkgconf - not found
===> Verifying install for pkgconf in /usr/ports/devel/pkgconf
===> Installing existing package /packages/All/pkgconf-0.9.4.txz
Installing pkgconf-0.9.4... done
===> Returning to build of gromacs-4.6.5_1
===> gromacs-4.6.5_1 depends on file: /usr/local/bin/as - found
===> gromacs-4.6.5_1 depends on file: /usr/local/libdata/pkgconfig/xext.pc - not found
===> Verifying install for /usr/local/libdata/pkgconfig/xext.pc in /usr/ports/x11/libXext
===> Installing existing package /packages/All/libXext-1.3.2,1.txz
Installing libXext-1.3.2,1...Installing kbproto-1.0.6... done
Installing libX11-1.6.2,1...Installing libXau-1.0.8...Installing xproto-7.0.25... done
done
Installing libXdmcp-1.1.1... done
Installing libpthread-stubs-0.3_4... done
Installing libxcb-1.9.3...Installing libxml2-2.8.0_3... done
done
done
Installing xextproto-7.2.1... done
done
===> Returning to build of gromacs-4.6.5_1
===> gromacs-4.6.5_1 depends on file: /usr/local/libdata/pkgconfig/x11.pc - found
===> gromacs-4.6.5_1 depends on file: /usr/local/bin/perl5.16.3 - not found
===> Verifying install for /usr/local/bin/perl5.16.3 in /usr/ports/lang/perl5.16
===> Installing existing package /packages/All/perl5-5.16.3_6.txz
Installing perl5-5.16.3_6...Removing /usr/local/etc/perl5_version... Done.
Creating /usr/local/etc/perl5_version... Done.
Removing stale symlinks from /usr/bin...
Skipping /usr/bin/perl
Skipping /usr/bin/perl5
Done.
Creating various symlinks in /usr/bin...
Symlinking /usr/local/bin/perl5.16.3 to /usr/bin/perl
Symlinking /usr/local/bin/perl5.16.3 to /usr/bin/perl5
Done.
Cleaning up /etc/manpath.config... Done.
Spamming /etc/manpath.config... Done.
done
===> Returning to build of gromacs-4.6.5_1
===========================================================================
=======================<phase: lib-depends >============================
===> gromacs-4.6.5_1 depends on shared library: libgsl.so - not found
===> Verifying for libgsl.so in /usr/ports/math/gsl
===> Installing existing package /packages/All/gsl-1.16.txz
Installing gsl-1.16... done
===> Returning to build of gromacs-4.6.5_1
===> gromacs-4.6.5_1 depends on shared library: libblas.so - not found
===> Verifying for libblas.so in /usr/ports/math/blas
===> Installing existing package /packages/All/blas-3.4.2_1.txz
Installing blas-3.4.2_1... done
===> Returning to build of gromacs-4.6.5_1
===> gromacs-4.6.5_1 depends on shared library: liblapack.so - not found
===> Verifying for liblapack.so in /usr/ports/math/lapack
===> Installing existing package /packages/All/lapack-3.4.2_1.txz
Installing lapack-3.4.2_1... done
<snip>
cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/txtdump.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/txtdump.c
/usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles
[ 4%] Building C object src/gmxlib/CMakeFiles/gmx.dir/sighandler.c.o
cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/sighandler.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/sighandler.c
/usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles
[ 4%] Building C object src/gmxlib/CMakeFiles/gmx.dir/gbutil.c.o
cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/gbutil.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/gbutil.c
/usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles
[ 4%] Building C object src/gmxlib/CMakeFiles/gmx.dir/wman.c.o
cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/wman.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/wman.c
/usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles
[ 4%] Building C object src/gmxlib/CMakeFiles/gmx.dir/smalloc.c.o
cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/smalloc.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/smalloc.c
/usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles 16
[ 5%] Building C object src/gmxlib/CMakeFiles/gmx.dir/calch.c.o
cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/calch.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/calch.c
/usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles
[ 5%] Building C object src/gmxlib/CMakeFiles/gmx.dir/warninp.c.o
cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/warninp.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/warninp.c
/usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles
[ 5%] Building C object src/gmxlib/CMakeFiles/gmx.dir/statutil.c.o
cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/statutil.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/statutil.c
/usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles
[ 5%] Building C object src/gmxlib/CMakeFiles/gmx.dir/gmxfio.c.o
cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/gmxfio.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/gmxfio.c
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cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/atomprop.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/atomprop.c
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[ 5%] Building C object src/gmxlib/CMakeFiles/gmx.dir/gmx_random.c.o
cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/gmx_random.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/gmx_random.c
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cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/do_fit.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/do_fit.c
/usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles
[ 11%] Building C object src/gmxlib/CMakeFiles/gmx.dir/ifunc.c.o
cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/ifunc.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/ifunc.c
/usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles
[ 11%] Building C object src/gmxlib/CMakeFiles/gmx.dir/copyrite.c.o
cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/copyrite.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/copyrite.c
/usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles
[ 11%] Building C object src/gmxlib/CMakeFiles/gmx.dir/gmx_matrix.c.o
cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/gmx_matrix.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/gmx_matrix.c
/usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles
[ 11%] Building C object src/gmxlib/CMakeFiles/gmx.dir/trnio.c.o
cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/trnio.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/trnio.c
/usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles
[ 11%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nrnb.c.o
cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/nrnb.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/nrnb.c
/usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles 22
[ 12%] Building C object src/gmxlib/CMakeFiles/gmx.dir/md_logging.c.o
cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/md_logging.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/md_logging.c
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[ 12%] Building C object src/gmxlib/CMakeFiles/gmx.dir/ewald_util.c.o
cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/ewald_util.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/ewald_util.c
/usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles
[ 12%] Building C object src/gmxlib/CMakeFiles/gmx.dir/invblock.c.o
cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/invblock.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/invblock.c
/usr/local/bin/cmake -E cmake_progress_report /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/CMakeFiles
[ 12%] Building C object src/gmxlib/CMakeFiles/gmx.dir/mvdata.c.o
cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/mvdata.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/mvdata.c
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[ 12%] Building C object src/gmxlib/CMakeFiles/gmx.dir/gmx_cyclecounter.c.o
cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_RDTSCP -DTMPI_EXPORTS -Dgmx_EXPORTS -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wall -Wno-unused -Wunused-value -O2 -pipe -fno-strict-aliasing -fomit-frame-pointer -funroll-all-loops -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/local/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/include -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib -fopenmp -o CMakeFiles/gmx.dir/gmx_cyclecounter.c.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5/src/gmxlib/gmx_cyclecounter.c
{standard input}: Assembler messages:
{standard input}:25: Error: no such instruction: `rdtscp'
{standard input}:77: Error: no such instruction: `rdtscp'
*** Error code 1
Stop in /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5.
*** Error code 1
Stop in /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5.
*** Error code 1
Stop in /wrkdirs/usr/ports/science/gromacs/work/gromacs-4.6.5.
*** Error code 1
Stop in /usr/ports/science/gromacs.
===> Cleaning for gromacs-4.6.5_1
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