[RELEASE - head-default] Build failed for R-3.0.1 during build
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Thu Jul 25 03:48:52 UTC 2013
Maintainer: bf at FreeBSD.org
Last committer: bf at FreeBSD.org
Ident: $FreeBSD: head/math/R/Makefile 319316 2013-05-28 15:15:05Z bf $
Log URL: http://beefy2.isc.freebsd.org/bulk/head-default/2013-07-25_02h34m13s/logs/R-3.0.1.log
Build URL: http://beefy2.isc.freebsd.org/bulk/head-default/2013-07-25_02h34m13s
Log:
====>> Building math/R
build started at Thu Jul 25 03:35:42 UTC 2013
port directory: /usr/ports/math/R
building for: FreeBSD head-default-job-09 10.0-CURRENT FreeBSD 10.0-CURRENT amd64
maintained by: bf at FreeBSD.org
Makefile ident: $FreeBSD: head/math/R/Makefile 319316 2013-05-28 15:15:05Z bf $
Poudriere version: 3.1-pre
---Begin Environment---
OSVERSION=1000035
UNAME_v=FreeBSD 10.0-CURRENT
UNAME_r=10.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
MASTERMNT=/usr/local/poudriere/data/build/head-default/ref
PKG_EXT=txz
FORCE_PACKAGE=yes
tpid=23700
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin
POUDRIERE_BUILD_TYPE=bulk
NBPARALLEL=24
PKGNG=1
PKGNAME=R-3.0.1
PKG_DELETE=/usr/local/sbin/pkg delete -y -f
PKG_ADD=/usr/local/sbin/pkg add
PWD=/root
MASTERNAME=head-default
USER=root
HOME=/root
POUDRIERE_VERSION=3.1-pre
SKIPSANITY=0
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
---End Environment---
---Begin OPTIONS List---
===> The following configuration options are available for R-3.0.1:
ATLAS=off: Use ATLAS instead of BLAS/LAPACK
GHOSTSCRIPT=on: [dev2]bitmap() graphics devices
ICU=on: Use ICU for collation in multibyte locales
INFO_MANUALS=on: GNU info manuals
JPEG=on: jpeg() graphics device
LETTER_PAPER=off: US Letter paper
LIBR=on: R shared library and a dynamically-linked R
MISSING=off: use libmissing rather than libquadmath
PANGOCAIRO=on: cairo and pango graphics support
PCRE_PORT=on: Use devel/pcre instead of the bundled PCRE
PDF_MANUALS=off: PDF manuals (requires TeX)
PNG=on: png() graphics device
TCLTK=on: tcltk package
THREADS=on: Threading support
TIFF=on: TIFF image format support
X11=on: X11() graphics device
===> Use 'make config' to modify these settings
---End OPTIONS List---
--CONFIGURE_ARGS--
--enable-memory-profiling rdocdir=/usr/local/share/doc/R --with-system-bzlib --with-system-zlib --with-blas="no" --with-lapack="no" --with-ICU --with-system-pcre --enable-threads=posix --with-jpeglib --enable-R-shlib --with-libpng --with-tcltk --with-tcl-config=/usr/local/lib/tcl8.6/tclConfig.sh --with-tk-config=/usr/local/lib/tk8.6/tkConfig.sh --with-libtiff --with-x --x-libraries=/usr/local/lib --x-includes=/usr/local/include --prefix=/usr/local ${_LATE_CONFIGURE_ARGS}
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
SED="/usr/local/bin/gsed" ac_cv_have_decl_powl=yes ac_cv_have_decl_log1pl=yes FCFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc46" INSTALL_DATA="install -o root -g wheel -m 644" R_LD_LIBRARY_PATH="/usr/local/lib/gcc46:/usr/local/lib" TAR="/usr/bin/tar" TMPDIR="/tmp" SHLIB_LDFLAGS="-fpic" SHLIB_CXXLDFLAGS="-fpic" TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh F77="gfortran46" FC="gfortran46" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc46" ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144
--End CONFIGURE_ENV--
--MAKE_ENV--
TMPDIR="/tmp" TMPDIR="/tmp" SHELL=/bin/sh NO_LINT=YES F77="gfortran46" FC="gfortran46" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc46" ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="gcc46" CFLAGS="-O2 -pipe -Wl,-rpath=/usr/local/lib/gcc46 -fno-strict-aliasing" CPP="cpp46" CPPFLAGS="-I/usr/local/include" LDFLAGS=" -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc46" CXX="g++46" CXXFLAGS="-O2 -pipe -Wl,-rpath=/usr/local/lib/gcc46 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc46" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -o root -g wheel -m 555" BSD_INSTALL_LIB="install -s -o roo
t -g wheel -m 444" BSD_INSTALL_SCRIPT="install -o root -g wheel -m 555" BSD_INSTALL_DATA="install -o root -g wheel -m 444" BSD_INSTALL_MAN="install -o root -g wheel -m 444"
--End MAKE_ENV--
--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/R
DOCSDIR=/usr/local/share/doc/R
EXAMPLESDIR=/usr/local/share/examples/R
WWWDIR=/usr/local/www/R
ETCDIR=/usr/local/etc/R
--End SUB_LIST--
---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PACKAGES=/packages
DISTDIR=/distfiles
#### /usr/local/etc/poudriere.d/make.conf ####
WITH_PKGNG=yes
NO_RESTRICTED=yes
DISABLE_MAKE_JOBS=yes
---End make.conf---
===> Cleaning for R-3.0.1
=======================<phase: check-config >============================
=========================================================================
=======================<phase: pkg-depends >============================
===> R-3.0.1 depends on file: /usr/local/sbin/pkg - not found
===> Verifying install for /usr/local/sbin/pkg in /usr/ports/ports-mgmt/pkg
===> Installing existing package /packages/All/pkg-1.1.4_1.txz
Installing pkg-1.1.4_1... done
If you are upgrading from the old package format, first run:
# pkg2ng
===> Returning to build of R-3.0.1
=========================================================================
=======================<phase: fetch-depends >============================
=========================================================================
=======================<phase: fetch >============================
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by R-3.0.1 for building
=========================================================================
=======================<phase: checksum >============================
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by R-3.0.1 for building
=> SHA256 Checksum OK for R-3.0.1.tar.gz.
=========================================================================
=======================<phase: extract-depends>============================
===> R-3.0.1 depends on file: /usr/local/bin/perl5.14.4 - not found
===> Verifying install for /usr/local/bin/perl5.14.4 in /usr/ports/lang/perl5.14
===> Installing existing package /packages/All/perl-5.14.4.txz
Installing perl-5.14.4...Removing stale symlinks from /usr/bin...
Skipping /usr/bin/perl
Skipping /usr/bin/perl5
Done.
Creating various symlinks in /usr/bin...
Symlinking /usr/local/bin/perl5.14.4 to /usr/bin/perl
Symlinking /usr/local/bin/perl5.14.4 to /usr/bin/perl5
Done.
Cleaning up /etc/make.conf... Done.
Spamming /etc/make.conf... Done.
done
===> Returning to build of R-3.0.1
=========================================================================
=======================<phase: extract >============================
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by R-3.0.1 for building
===> Extracting for R-3.0.1
=> SHA256 Checksum OK for R-3.0.1.tar.gz.
=========================================================================
=======================<phase: patch-depends >============================
===> R-3.0.1 depends on file: /usr/local/bin/perl5.14.4 - found
=========================================================================
=======================<phase: patch >============================
===> Patching for R-3.0.1
===> Applying FreeBSD patches for R-3.0.1
=========================================================================
=======================<phase: build-depends >============================
===> R-3.0.1 depends on file: /usr/local/bin/gsed - not found
===> Verifying install for /usr/local/bin/gsed in /usr/ports/textproc/gsed
===> Installing existing package /packages/All/gsed-4.2.2.txz
Installing gsed-4.2.2... done
===> Returning to build of R-3.0.1
===> R-3.0.1 depends on executable: gcc46 - not found
===> Verifying install for gcc46 in /usr/ports/lang/gcc
===> Installing existing package /packages/All/gcc-4.6.3.txz
Installing gcc-4.6.3...Installing mpfr-3.1.2...Installing gmp-5.1.2... done
done
Installing mpc-0.9... done
Installing gcc-ecj-4.5... done
Installing gettext-0.18.3...Installing libiconv-1.14_1... done
done
Installing binutils-2.23.2... done
done
===> Returning to build of R-3.0.1
===> R-3.0.1 depends on file: /usr/local/bin/as - found
===> R-3.0.1 depends on file: /usr/local/libdata/pkgconfig/x11.pc - not found
===> Verifying install for /usr/local/libdata/pkgconfig/x11.pc in /usr/ports/x11/libX11
===> Installing existing package /packages/All/libX11-1.6.0,1.txz
Installing libX11-1.6.0,1...Installing xproto-7.0.24... done
Installing libxcb-1.9.1...Installing libXdmcp-1.1.1... done
Installing libXau-1.0.8... done
Installing libxml2-2.8.0_2...Installing pkgconf-0.9.2_1... done
done
Installing libpthread-stubs-0.3_3... done
done
Installing kbproto-1.0.6... done
done
===> Returning to build of R-3.0.1
===> R-3.0.1 depends on file: /usr/local/libdata/pkgconfig/xmu.pc - not found
===> Verifying install for /usr/local/libdata/pkgconfig/xmu.pc in /usr/ports/x11-toolkits/libXmu
===> Installing existing package /packages/All/libXmu-1.1.1,1.txz
Installing libXmu-1.1.1,1...Installing xextproto-7.2.1... done
Installing libXext-1.3.2,1... done
Installing libSM-1.2.1,1...Installing libICE-1.0.8,1... done
done
Installing libXt-1.1.4,1... done
done
===> Returning to build of R-3.0.1
===> R-3.0.1 depends on file: /usr/local/libdata/pkgconfig/xt.pc - found
===> R-3.0.1 depends on file: /usr/local/bin/perl5.14.4 - found
=========================================================================
=======================<phase: lib-depends >============================
===> R-3.0.1 depends on shared library: icui18n - not found
===> Verifying install for icui18n in /usr/ports/devel/icu
===> Installing existing package /packages/All/icu-50.1.2.txz
Installing icu-50.1.2... done
===> Returning to build of R-3.0.1
===> R-3.0.1 depends on shared library: pcre - not found
===> Verifying install for pcre in /usr/ports/devel/pcre
===> Installing existing package /packages/All/pcre-8.33.txz
Installing pcre-8.33... done
<snip>
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