Issues when updating ports

[Kevin Oberman]

I was doing the massive port upgrade for post libkse as libpthread. The
reinstall of gtk failed because of a file installed by gucharmap-gnome,
so I deleted the gucharmap-gnome package and installed gtk. So far, so
good.

Then I tried to re-install gucharmap-gnome. (portupgrade -RN gucharmap-gnome)
The attempt to re-install failed for docbook-xsl with the error:
pkg_delete: '/usr/local/share/xsl/docbook/catalog' fails original MD5 checksum - deleted anyway.
pkg_delete: unable to completely remove directory '/usr/local/share/xml/docbook'pkg_delete: couldn't entirely delete package (perhaps the packing list is
incorrectly specified?)
xmlcatmgr: enabling compatibility mode; removing ALL matching entries
[Updating the pkgdb <format:bdb1_btree> in /var/db/pkg ... - 428 packages found (-1 +0) (...) done]
--->  Installing the new version via the port
===>  Installing for docbook-xsl-1.63.0_1
===>   docbook-xsl-1.63.0_1 depends on file: /usr/local/share/xml/docbook/4.2/catalog.xml - not found
===>    Verifying reinstall for /usr/local/share/xml/docbook/4.2/catalog.xml in /usr/ports/textproc/docbook-xml
===>  Installing for docbook-xml-4.2_1
===>   docbook-xml-4.2_1 depends on file: /usr/local/bin/xmlcatmgr - found
===>   Generating temporary packing list
for file in `unzip -l /usr/ports/distfiles/docbook-xml-4.2.zip|/usr/bin/awk '/:[0-9].*[^\/]$/{print $4}'`; do  install  -o root -g wheel -m 444 /usr/ports/textproc/docbook-xml/work/$file /usr/local/share/xml/docbook/4.2/$file;  done
xmlcatmgr: entry already exists for `/usr/local/share/xml/docbook/4.2/docbook.cat' of type `CATALOG'
*** Error code 1
 
I will admit to general cluelessness about xmlcatmgr, so I am unsure how
to best proceed. Any suggestions?

I still have hope of getting Gnome running on my laptop today!

Thanks,
-- 
R. Kevin Oberman, Network Engineer
Energy Sciences Network (ESnet)
Ernest O. Lawrence Berkeley National Laboratory (Berkeley Lab)
E-mail: oberman at es.net			Phone: +1 510 486-8634