cvs commit: ports/biology Makefile ports/biology/crux Makefile distinfo pkg-descr pkg-plist

Tue Jun 9 10:31:58 UTC 2009

The Restless Daemon identified a mtree error while trying to build:
 crux-1.0.1 maintained by jasone at FreeBSD.org
 Makefile ident: $FreeBSD: ports/biology/crux/Makefile,v 1.1 2009/06/08 23:49:59 jasone Exp $

Excerpt from http://QAT.TecNik93.com/logs/7-STABLE-FPT-NPD/crux-1.0.1.log :

install -m 755 build/inst/site-packages/Crux/include/Crux/Mc3/__init__.pxd /usr/local/lib/python2.6/site-packages/Crux/include/Crux/Mc3
install -m 755 build/inst/site-packages/Crux/include/Crux/Tree/__init__.pxd /usr/local/lib/python2.6/site-packages/Crux/include/Crux/Tree
install -m 755 build/inst/site-packages/Crux/include/Crux/__init__.pxd /usr/local/lib/python2.6/site-packages/Crux/include/Crux
install -m 755 build/inst/site-packages/Crux/CTMatrix.so /usr/local/lib/python2.6/site-packages/Crux
install -m 755 build/inst/site-packages/Crux/Character.so /usr/local/lib/python2.6/site-packages/Crux
install -m 755 build/inst/site-packages/Crux/DistMatrix/Nj.so /usr/local/lib/python2.6/site-packages/Crux/DistMatrix
install -m 755 build/inst/site-packages/Crux/Fasta.so /usr/local/lib/python2.6/site-packages/Crux
install -m 755 build/inst/site-packages/Crux/Mc3/Chain.so /usr/local/lib/python2.6/site-packages/Crux/Mc3
install -m 755 build/inst/site-packages/Crux/Mc3/Post.so /usr/local/lib/python2.6/site-packages/Crux/Mc3
install -m 755 build/inst/site-packages/Crux/Newick.so /usr/local/lib/python2.6/site-packages/Crux
install -m 755 build/inst/site-packages/Crux/Taxa.so /usr/local/lib/python2.6/site-packages/Crux
install -m 755 build/inst/site-packages/Crux/Tree/Bipart.so /usr/local/lib/python2.6/site-packages/Crux/Tree
install -m 755 build/inst/site-packages/Crux/Tree/Lik.so /usr/local/lib/python2.6/site-packages/Crux/Tree
install -m 755 build/inst/site-packages/Crux/Tree/Sumt.so /usr/local/lib/python2.6/site-packages/Crux/Tree
install -m 755 build/inst/site-packages/Parsing.so /usr/local/lib/python2.6/site-packages/.
install -m 755 build/inst/site-packages/Crux/DistMatrix/__init__.so /usr/local/lib/python2.6/site-packages/Crux/DistMatrix
install -m 755 build/inst/site-packages/Crux/Mc3/__init__.so /usr/local/lib/python2.6/site-packages/Crux/Mc3
install -m 755 build/inst/site-packages/Crux/Tree/__init__.so /usr/local/lib/python2.6/site-packages/Crux/Tree
install -m 755 build/inst/site-packages/Crux/__init__.so /usr/local/lib/python2.6/site-packages/Crux
install -m 755 build/inst/site-packages/Crux/Config.py /usr/local/lib/python2.6/site-packages/Crux
install -m 755 build/inst/site-packages/Crux/Copying.py /usr/local/lib/python2.6/site-packages/Crux
install -m 755 build/inst/site-packages/Crux/DistMatrix/__init__.py /usr/local/lib/python2.6/site-packages/Crux/DistMatrix
install -m 755 build/inst/site-packages/Crux/Mc3/__init__.py /usr/local/lib/python2.6/site-packages/Crux/Mc3
install -m 755 build/inst/site-packages/Crux/Tree/__init__.py /usr/local/lib/python2.6/site-packages/Crux/Tree
install -m 755 build/inst/site-packages/Crux/__init__.py /usr/local/lib/python2.6/site-packages/Crux
===>   Registering installation for crux-1.0.1
================================================================
====================<phase 7: make package>====================
===>  Building package for crux-1.0.1
Creating package /tmp/packages/All/crux-1.0.1.tbz
Registering depends: gcc-4.3.4.20090531 libiconv-1.11_1 python26-2.6.2 mpfr-2.4.1_1 libgmp-4.3.1.
Creating bzip'd tar ball in '/tmp/packages/All/crux-1.0.1.tbz'
Deleting crux-1.0.1
================================================================

=== Checking filesystem state
list of extra files and directories in / (not present before this port was installed but present after it was deinstalled)
1275548     1536 -rwxr-xr-x    1 root             wheel              766285 Jun  9 10:31 usr/local/lib/python2.6/site-packages/Parsing.so
================================================================
build of /usr/ports/biology/crux ended at Tue Jun  9 10:31:31 UTC 2009

The tarballed WRKDIR can be found here:
http://QAT.TecNik93.com/wrkdirs/7-STABLE-FPT-NPD/crux-1.0.1.tbz

PortsMon page for the port:
http://portsmon.freebsd.org/portoverview.py?category=biology&portname=crux

The build which triggered this BotMail was done under
tinderbox-devel-3.2_4; dsversion: 3.2 on RELENG_7 on amd64, kern.smp.cpus: 4
with tinderd_flags="-nullfs -plistcheck -onceonly" and ccache support, with the
"official" up-to-date Ports Tree, with the following vars set:
NOPORTDOCS=yes,  NOPORTEXAMPLES=yes, NOPORTDATA=yes, FORCE_PACKAGE=yes.

A description of the testing process can be found here:
http://T32.TecNik93.com/FreeBSD/QA-Tindy/

Thanks for your work on making FreeBSD better,

--
QAT - your friendly neighborhood Daemon,
preparing  a heck of an error trapping system:
 - "HMC and EOI?"
 - "Halt, Melt and Catch fire or Execute Operator Immediately."