cvs commit: ports/biology Makefile ports/biology/phrap Makefile distinfo pkg-descr ports/biology/phrap/files patch-makefile

Edwin Groothuis edwin at
Sat May 24 07:03:24 UTC 2008

edwin       2008-05-24 07:03:23 UTC

  FreeBSD ports repository

  Modified files:
    biology              Makefile 
  Added files:
    biology/phrap        Makefile distinfo pkg-descr 
    biology/phrap/files  patch-makefile 
  New port: biology/consed viewing and editing workbench for sequence
          Consed is a tool for viewing, editing, and finishing sequence
          The port is constituted of 4 parts:
          biology/phred: base caller with quality evaluation
          biology/phrap: sequence assembler for shotgun sequencing
          biology/consed: workbench
          biology/phd2fasta: small utility
          All these can be used separately; however, most function
          of consed depends on the others.
          Although these programs are licensed freely for academic
          and nonprofit purposes, users have to contact the authors
          to get the softwares.
          Phred (including phd2fasta) and phrap are emailed,
          and consed can be downloaded to a restricted IP address.
          For commercial users, the licensing fee is ca. $10,000 at
          the time of writing.
  PR:             ports/118548
  Submitted by:   Motomichi Matsuzaki <mzaki at>
  Revision  Changes    Path
  1.100     +1 -0      ports/biology/Makefile
  1.1       +62 -0     ports/biology/phrap/Makefile (new)
  1.1       +3 -0      ports/biology/phrap/distinfo (new)
  1.1       +27 -0     ports/biology/phrap/files/patch-makefile (new)
  1.1       +21 -0     ports/biology/phrap/pkg-descr (new)

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